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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_621062_621755_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
621062 - 621755
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGCACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
GTTTGCTGAACA
Flanking Amino Acid:
ELLDVLIESGEMPANAKEDR
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
75.5
40.4
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
67
0.38
1.1
62.1
43.3
Minor 5ss
41
-1
3.1
58.7
45.6
Minor BPS
63.9
0.43
1.9
77.35
39.2

Associated Gene:

Gene:
MYOCD
Ensembl Gene ID:
ENSAPLG00000013526
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022098
620339 - 825184
204846
ENSAPLT00000046004
620339 - 656335
35997
ENSAPLT00000021780
620493 - 732525
112033
ENSAPLT00000045607
620339 - 732710
112372
ENSAPLT00000014120
620339 - 657093
36755
ENSAPLT00000032362
620339 - 825184
204846
ENSAPLT00000031441
620339 - 803070
182732
ENSAPLT00000047322
620493 - 732628
112136