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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6233403_6234436_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6233403 - 6234436
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCATA
5'SS Class:
major
3'SS Sequence:
CTTCTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTCTGTTTAATG
Flanking Amino Acid:
KPSSLCGNKPGILPTHSRTD
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
72.5
38.4
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
81.7
0.71
0.8
80.5
31.5
Minor 5ss
49.1
-0.1
2.5
66.4
44.7
Minor BPS
61
0.21
1.8
66.31
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008476
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008842
6222780 - 6238658
15879