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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6234373_6234512_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6234373 - 6234512
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCACTCTAC
5'SS Class:
weak_major
3'SS Sequence:
GCAGCAAGGGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
AGTTCTTACACA
Flanking Amino Acid:
IAEEIASQPK
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.4
47.3
45.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
47.2
-0.1
1.1
36.2
39.2
Minor 5ss
35.2
-1.7
4.2
53.6
44.3
Minor BPS
49.7
-0
2.1
66
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008476
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040080
6234371 - 6237581
3211