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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6234685_6235674_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6234685 - 6235674
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACCC
5'SS Class:
major
3'SS Sequence:
CTCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
GTTTCCACATCT
Flanking Amino Acid:
ADSSPTAVKKLPDANVEDEE
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.3
38.9
Major BPS
70
0.5
1
67
39.8
Major PPT
85.8
0.81
0.8
83.6
31.4
Minor 5ss
33.3
-1.9
3
43.9
43.3
Minor BPS
51.5
0.13
2.1
78.58
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008476
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040080
6234371 - 6237581
3211