About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6235825_6237350_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6235825 - 6237350
Intron Length:
1526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGATTTTTACAT
Flanking Amino Acid:
KIQMKLSKIKLPYFMNELTL
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77.3
0.61
0.9
76.9
37.3
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
53.1
0.17
1.7
70.2
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008476
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040080
6234371 - 6237581
3211