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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6240968_6244166_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6240968 - 6244166
Intron Length:
3199

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCCTGACCT
5'SS Class:
major
3'SS Sequence:
GTTTCAGGCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
CATTCTTTCAGT
Flanking Amino Acid:
KEPLDCSGRVRAYCLADSDE
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
63.8
41.7
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
52
0.04
1.2
49.1
43.3
Minor 5ss
25.8
-2.8
3.9
40.5
45.2
Minor BPS
52.6
0.16
2.1
72.26
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024940
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028705
6240831 - 6247604
6774