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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6246648_6247481_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6246648 - 6247481
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTGATTTAATT
Flanking Amino Acid:
IERKLEQEFQKIFVMPNMDD
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.4
31.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.6
0.76
0.7
79.2
26.5
Minor 5ss
43.7
-0.7
3
61.2
43.7
Minor BPS
61.2
0.43
1.6
76.08
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024940
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028705
6240831 - 6247604
6774