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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6261149_6262568_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6261149 - 6262568
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTCATTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TAAATAATGACA
Flanking Amino Acid:
VVTLLYYSFSNTSSVTVPET
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.4
58.9
41.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
42.2
-0.9
2.8
54.4
42.7
Minor BPS
44.2
-0.4
1.8
54.9
36.7

Associated Gene:

Gene:
ERN1
Ensembl Gene ID:
ENSAPLG00000007775
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042721
6261101 - 6287964
26864