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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_627743_628110_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
627743 - 628110
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTATCCCAAATC
Flanking Amino Acid:
SYPGMHQGQIKQSNEQMVKS
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
74.7
28.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
29.2
-2.4
3.1
34.7
35.4
Minor BPS
56
0.17
2
71.97
39.3

Associated Gene:

Gene:
MYOCD
Ensembl Gene ID:
ENSAPLG00000013526
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031441
620339 - 803070
182732
ENSAPLT00000047322
620493 - 732628
112136
ENSAPLT00000022098
620339 - 825184
204846
ENSAPLT00000046004
620339 - 656335
35997
ENSAPLT00000021780
620493 - 732525
112033
ENSAPLT00000045607
620339 - 732710
112372
ENSAPLT00000014120
620339 - 657093
36755
ENSAPLT00000032362
620339 - 825184
204846