Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6283869_6284205_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6283869 - 6284205

Intron Length:

337

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTGTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGATAT

U12 Branch Point Sequence:

CTTTGTCTAACA

Flanking Amino Acid:

GHGAEGTIVYRGTFDNRDVA

Intron Amino Acid Position:

571

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

75.1

35.1

Major BPS

64.1

0.35

1.3

45.5

Major PPT

77.4

0.62

0.8

71.7

32.9

Minor 5ss

30.7

-2.2

3.7

46.1

49.1

Minor BPS

53.6

0.11

2.1

71.45

41.1

Associated Gene:

Gene:

ERN1

Ensembl Gene ID:

ENSAPLG00000007775

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008171

6262536 - 6287964

25429

ENSAPLT00000042721

6261101 - 6287964

26864