About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_629024_629601_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
629024 - 629601
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
ATCCTCTCACAC
Flanking Amino Acid:
APPAPSGTPQDHPHSTEGNA
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
72.7
0.56
1
75
30.1
Major PPT
86.7
0.83
0.7
84.4
23.5
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
43.6
-0.5
1.8
51.33
39.4

Associated Gene:

Gene:
MYOCD
Ensembl Gene ID:
ENSAPLG00000013526
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031441
620339 - 803070
182732
ENSAPLT00000022098
620339 - 825184
204846
ENSAPLT00000047322
620493 - 732628
112136
ENSAPLT00000021780
620493 - 732525
112033
ENSAPLT00000046004
620339 - 656335
35997
ENSAPLT00000014120
620339 - 657093
36755
ENSAPLT00000032362
620339 - 825184
204846