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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6292287_6292860_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6292287 - 6292860
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTGGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTATTAGTAACA
Flanking Amino Acid:
MDYNTLPVDKW
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.5
38.6
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
76.8
0.6
0.9
69.4
41.7
Minor 5ss
41
-1
3.1
50.4
46
Minor BPS
52.7
0.08
2.2
73.02
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001183
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001167
6292283 - 6297530
5248