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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_629778_636476_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
629778 - 636476
Intron Length:
6699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CCGCACCCGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TTCCCCGCACCC
Flanking Amino Acid:
SDLVNMHILQGTQVNFPKPS
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
56.5
0.15
1
50.3
33.8
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
43.5
-0.5
2.3
59.94
45.2

Associated Gene:

Gene:
MYOCD
Ensembl Gene ID:
ENSAPLG00000013526
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022098
620339 - 825184
204846