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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6313911_6314681_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6313911 - 6314681
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTTCTTTTATG
Flanking Amino Acid:
TKPLFPSAGQMGTPVTSSST
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
75.8
36.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.9
0.74
0.9
76.8
37.1
Minor 5ss
37.3
-1.4
3.6
55.1
49.1
Minor BPS
61.6
0.22
1.7
66.64
41.8

Associated Gene:

Gene:
ZNF207
Ensembl Gene ID:
ENSAPLG00000007390
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028875
6311172 - 6321288
10117
ENSAPLT00000007708
6311172 - 6322696
11525