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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6320630_6321090_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6320630 - 6321090
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAG
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
GPGLAIHCMQVHKETIDAVP
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
48.3
-0.1
1.7
57.1
49.4
Major PPT
90
0.9
0.6
89.8
18.6
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
ZNF207
Ensembl Gene ID:
ENSAPLG00000007390
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028875
6311172 - 6321288
10117
ENSAPLT00000007708
6311172 - 6322696
11525