About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6327067_6327545_F

Intron Information:

Intron Rank:
1
Intron Class:
major_hybrid
Intron Phase:
1
Intron Coordinates:
6327067 - 6327545
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
GAACACACAACAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGTTCCTGAACA
Flanking Amino Acid:
SGPQPQLHNAGSNRFCEDWM
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.9
23.9
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
49.9
-0
1
41.2
37.4
Minor 5ss
36.1
-1.6
3.2
46.9
48.4
Minor BPS
79.7
0.93
1.3
85.68
32.9

Associated Gene:

Gene:
C17orf75
Ensembl Gene ID:
ENSAPLG00000007375
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007644
6326976 - 6328432
1457