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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6337449_6338182_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6337449 - 6338182
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATACAATTAATT
Flanking Amino Acid:
LLRMAVALICMSFEFGRAVW
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
80.8
31.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.3
0.84
0.8
80.2
37.3
Minor 5ss
42.1
-0.9
2.8
56.5
35.6
Minor BPS
52.9
0.17
1.8
71.68
38.4

Associated Gene:

Gene:
RHBDL3
Ensembl Gene ID:
ENSAPLG00000007263
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007540
6336817 - 6363445
26629