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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6338244_6340086_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6338244 - 6340086
Intron Length:
1843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTCCTTGTCT
Flanking Amino Acid:
VSAHLANIVMNWSGMKCQFK
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
78.7
0.65
0.8
69.6
36.8
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
59.2
0.37
3.5
95.37
31.5

Associated Gene:

Gene:
RHBDL3
Ensembl Gene ID:
ENSAPLG00000007263
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007540
6336817 - 6363445
26629