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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6340188_6342902_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6340188 - 6342902
Intron Length:
2715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GCAATTTTAACA
Flanking Amino Acid:
SFVYVAGVVAGSLAVSVADM
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.4
32.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.2
0.77
0.7
77
31.8
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
59.6
0.3
1.3
61.06
39

Associated Gene:

Gene:
RHBDL3
Ensembl Gene ID:
ENSAPLG00000007263
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007540
6336817 - 6363445
26629