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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_634231_636476_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
634231 - 636476
Intron Length:
2246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
AGGTCCTGAACT
Flanking Amino Acid:
SDLVNMHILQDSAAEGSIQS
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
77.5
0.62
0.8
74.3
36.5
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
71
0.74
1.4
80.6
40.6

Associated Gene:

Gene:
MYOCD
Ensembl Gene ID:
ENSAPLG00000013526
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032362
620339 - 825184
204846
ENSAPLT00000031441
620339 - 803070
182732
ENSAPLT00000047322
620493 - 732628
112136
ENSAPLT00000021780
620493 - 732525
112033
ENSAPLT00000046004
620339 - 656335
35997
ENSAPLT00000014120
620339 - 657093
36755
ENSAPLT00000045607
620339 - 732710
112372