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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6348573_6358890_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6348573 - 6358890
Intron Length:
10318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTACCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACCC
Flanking Amino Acid:
RICYQDFVNLMSNKRSNSFR
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.7
0.74
0.8
77
36.3
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
64.1
0.42
1.6
72.92
38.9

Associated Gene:

Gene:
RHBDL3
Ensembl Gene ID:
ENSAPLG00000007263
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007540
6336817 - 6363445
26629