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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_636553_641091_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
636553 - 641091
Intron Length:
4539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCCT
5'SS Class:
major
3'SS Sequence:
TTGTGTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATAAT
U12 Branch Point Sequence:
ACTCTCTGCATT
Flanking Amino Acid:
EQRKSLERAKTEDYLKHKIR
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
68.2
42.7
Major BPS
63.8
0.34
1.2
64.1
39.8
Major PPT
82.6
0.73
0.9
77.3
37
Minor 5ss
40.6
-1.1
3.1
58
46.1
Minor BPS
46.7
-0.1
1.8
63.99
40.8

Associated Gene:

Gene:
MYOCD
Ensembl Gene ID:
ENSAPLG00000013526
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032362
620339 - 825184
204846
ENSAPLT00000031441
620339 - 803070
182732
ENSAPLT00000047322
620493 - 732628
112136
ENSAPLT00000022098
620339 - 825184
204846
ENSAPLT00000046004
620339 - 656335
35997
ENSAPLT00000014120
620339 - 657093
36755
ENSAPLT00000045607
620339 - 732710
112372