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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_636553_645880_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
636553 - 645880
Intron Length:
9328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTGTGTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATAAT
U12 Branch Point Sequence:
ACTCTCTGCATT
Flanking Amino Acid:
SSWQTKASCHTEDYLKHKIR
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.2
86.9
30.1
Major BPS
63.8
0.34
1.2
64.1
39.8
Major PPT
82.6
0.73
0.9
77.3
37
Minor 5ss
37.6
-1.4
3
50.6
39.2
Minor BPS
46.7
-0.1
1.8
63.99
40.8

Associated Gene:

Gene:
MYOCD
Ensembl Gene ID:
ENSAPLG00000013526
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021780
620493 - 732525
112033