Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6404582_6413205_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6404582 - 6413205

Intron Length:

8624

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCC|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TGTTAAATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TGTGTGTTAAAT

Flanking Amino Acid:

FVKLTTMAMYPHVTQADLKS

Intron Amino Acid Position:

580

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.3

75.7

40.1

Major BPS

71.2

0.53

70.3

31.9

Major PPT

71.8

0.49

68.1

42.1

Minor 5ss

40.2

-1.1

2.8

57.6

39.6

Minor BPS

49.6

0.05

2.2

73.29

43.5

Associated Gene:

Gene:

RHOT1

Ensembl Gene ID:

ENSAPLG00000006989

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007301

6404464 - 6430277

25814