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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_641148_732480_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
641148 - 732480
Intron Length:
91333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTGTGCTGACTG
Flanking Amino Acid:
QPPPFAERKNALKSPSAFHE
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.3
34.6
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
85.4
0.8
0.8
80.4
31.6
Minor 5ss
32
-2.1
2.6
39.1
38.9
Minor BPS
42.9
-0.6
2.1
47.28
46.4

Associated Gene:

Gene:
MYOCD
Ensembl Gene ID:
ENSAPLG00000013526
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047322
620493 - 732628
112136