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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6413882_6414577_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6413882 - 6414577
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTAACTGCATA
Flanking Amino Acid:
YVYGQEKYLLLHDVSDSEFL
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
72.2
39.9
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
90.8
0.92
0.6
83.9
31.1
Minor 5ss
40.5
-1.1
3.3
52.3
45.8
Minor BPS
47
-0.2
2.1
66.18
40.1

Associated Gene:

Gene:
RHOT1
Ensembl Gene ID:
ENSAPLG00000006989
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007301
6404464 - 6430277
25814