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Intron Name: Anas_platyrhynchos_platyrhynchos_19_6416239_6416615_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6416239 - 6416615

Intron Length:

377

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTGTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TGTTCTTTATGT

Flanking Amino Acid:

LQSIFDKHDLDRDCALSPDE

Intron Amino Acid Position:

319

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.81

0.9

80.5

34.9

Major BPS

83.9

0.84

73.9

41.3

Major PPT

78.8

0.65

0.9

76.8

37.4

Minor 5ss

49.9

-0

2.8

70.4

41.2

Minor BPS

61.1

0.43

1.9

80.3

41.9

Associated Gene:

Gene:

RHOT1

Ensembl Gene ID:

ENSAPLG00000006989

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007301

6404464 - 6430277

25814