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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6416701_6417372_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6416701 - 6417372
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTATGTATC
5'SS Class:
weak_major
3'SS Sequence:
TTTCAATAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAATAAAT
Flanking Amino Acid:
LELTPEYLFPPLKIPPDCTT
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.3
69.2
41.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
64.1
0.32
1
60.1
39.5
Minor 5ss
48.2
-0.2
2.4
67.5
36.5
Minor BPS
62.5
0.47
2
88.16
35.9

Associated Gene:

Gene:
RHOT1
Ensembl Gene ID:
ENSAPLG00000006989
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007301
6404464 - 6430277
25814