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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6421899_6422272_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6421899 - 6422272
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
AACCCCACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTTTTTAACC
Flanking Amino Acid:
AVNNKNSIDKVTSRWIPLIN
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
61.1
0.25
0.9
56.4
33.8
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
79.9
0.92
1
82.49
30.8

Associated Gene:

Gene:
RHOT1
Ensembl Gene ID:
ENSAPLG00000006989
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007301
6404464 - 6430277
25814