About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6422856_6423984_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6422856 - 6423984
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTGTTGAATG
Flanking Amino Acid:
RVPTHIVDYSEAEQSDEQLY
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69
0.43
1
62.9
42.2
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
49.7
-0.1
1.9
59.4
43.3

Associated Gene:

Gene:
RHOT1
Ensembl Gene ID:
ENSAPLG00000006989
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007301
6404464 - 6430277
25814