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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6439992_6440348_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6439992 - 6440348
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCTGTTTCATT
Flanking Amino Acid:
RNLLYFKNPLDAFALGQIFI
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
62.5
42.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80.6
0.69
0.8
73.5
36.8
Minor 5ss
30
-2.3
3.3
35.2
43.3
Minor BPS
50.5
0.1
2.2
74.65
43.4

Associated Gene:

Gene:
ADAP2
Ensembl Gene ID:
ENSAPLG00000006851
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007121
6439773 - 6445740
5968