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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6450298_6451214_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6450298 - 6451214
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTTCTCATTT
Flanking Amino Acid:
YVSFNQSADPSIHEKAQKRL
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.3
0.61
0.8
74.8
34.8
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
55.6
0.25
1.8
75.42
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029046
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017748
6449858 - 6456264
6407