About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6452033_6452334_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6452033 - 6452334
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTG
5'SS Class:
major
3'SS Sequence:
AACTATTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTTCACAACT
Flanking Amino Acid:
PSEDLFTFLKQKITTMEKWD
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.3
38.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
73.2
0.52
0.9
65.5
39.9
Minor 5ss
50
0
2.4
66.9
44.3
Minor BPS
66
0.58
1.8
89.17
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029046
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017748
6449858 - 6456264
6407