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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6454360_6454572_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6454360 - 6454572
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATCTCTTTATCT
Flanking Amino Acid:
AKRPVILTTNDPTFSLMFDG
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.4
0.66
0.8
73.6
36
Minor 5ss
32.1
-2
2.8
39.3
41.2
Minor BPS
69
0.67
1.6
81.9
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029046
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017748
6449858 - 6456264
6407