Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6455579_6456206_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6455579 - 6456206

Intron Length:

628

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGTC

5'SS Class:

strong_major

3'SS Sequence:

CATCAATCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TCTTCATCAATC

Flanking Amino Acid:

GTVTSQEKNKGSLQSSSEEK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

81.2

32.7

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

70.6

0.46

0.9

62.6

Minor 5ss

35.9

-1.6

3.5

51.5

45.7

Minor BPS

59.8

0.29

1.8

71.85

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017748

6449858 - 6456264

6407