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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6458313_6459066_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6458313 - 6459066
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTATACAAG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
AAATTATCAATT
Flanking Amino Acid:
RQTEQLLFENSVEKEDVLWT
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54
0.1
1.1
50.3
40.2
Major BPS
79
0.72
1
80.3
31.7
Major PPT
86.4
0.82
0.6
82.4
22.2
Minor 5ss
46
-0.4
2.7
57.7
42.4
Minor BPS
49.2
0.02
1.7
66.02
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006584
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006851
6456681 - 6465822
9142