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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6459212_6459555_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6459212 - 6459555
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTGTATT
Flanking Amino Acid:
ELTGNCSAPMFSGHRSVFPD
Intron Amino Acid Position:
870

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87
0.83
0.8
81.8
34.6
Minor 5ss
30.6
-2.2
2.9
38
41
Minor BPS
50.2
0.09
1.7
72.73
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006584
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006851
6456681 - 6465822
9142