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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_645947_732480_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
645947 - 732480
Intron Length:
86534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTCCTGATTC
Flanking Amino Acid:
SHHPLQSGRTFCSYGFSREG
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.3
34.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
80.8
0.69
0.7
75.3
26.8
Minor 5ss
32
-2.1
2.6
39.1
38.9
Minor BPS
66.6
0.5
1.7
79.35
36

Associated Gene:

Gene:
MYOCD
Ensembl Gene ID:
ENSAPLG00000013526
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032362
620339 - 825184
204846
ENSAPLT00000031441
620339 - 803070
182732
ENSAPLT00000022098
620339 - 825184
204846
ENSAPLT00000045607
620339 - 732710
112372
ENSAPLT00000021780
620493 - 732525
112033