Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6459714_6460507_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6459714 - 6460507

Intron Length:

794

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGCTTT

5'SS Class:

weak_major

3'SS Sequence:

TTTTCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTTGCTTTCATT

Flanking Amino Acid:

TVVHVQQKDDCHPMWKLKSP

Intron Amino Acid Position:

817

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

72.1

40.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

96.8

1.05

0.5

96.1

13.2

Minor 5ss

59.5

0.32

2.7

83.5

34.9

Minor BPS

57.1

0.31

1.8

75.88

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006584

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006851

6456681 - 6465822

9142