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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6462528_6463021_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6462528 - 6463021
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TATATTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATATTTTAATA
Flanking Amino Acid:
NEELNSKNIKISSTSKNISK
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.7
0.53
0.9
70.3
39.7
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
68.5
0.58
1.2
72.59
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006584
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006851
6456681 - 6465822
9142