Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6465214_6465762_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6465214 - 6465762

Intron Length:

549

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGCTG

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TAATATCAAACT

Flanking Amino Acid:

SLPDKDGDGQPCKKRREEDA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

60.4

45.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

94.8

1.01

0.5

92.6

17.3

Minor 5ss

27.5

-2.6

3.5

37.1

47.5

Minor BPS

46.2

-0.2

2.1

67.89

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006584

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006851

6456681 - 6465822

9142