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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6466421_6468270_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6466421 - 6468270
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGGC
5'SS Class:
major
3'SS Sequence:
CACCTGAATTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
GTCACCTGAATT
Flanking Amino Acid:
LGGLQQARQQIRESATLTRD
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.7
39.4
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
58.9
0.2
1
55.3
38.9
Minor 5ss
23.1
-3.1
3.4
32.1
42.7
Minor BPS
62.7
0.48
1.5
74.63
42

Associated Gene:

Gene:
CRLF3
Ensembl Gene ID:
ENSAPLG00000006471
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006713
6465662 - 6477718
12057