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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6470442_6470907_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6470442 - 6470907
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATTACAG
Flanking Amino Acid:
TKKALHIQLDSLPEVPSLVD
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85
0.79
0.7
83.7
24.4
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
49.4
-0.1
2.1
61.72
45.7

Associated Gene:

Gene:
CRLF3
Ensembl Gene ID:
ENSAPLG00000006471
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006713
6465662 - 6477718
12057