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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6472799_6473478_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6472799 - 6473478
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACTGTTT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTGAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTTTCTTTGAAG
Flanking Amino Acid:
QIGRTTLVPHEWTTGLEGYS
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.36
1.1
65.2
41
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
84.7
0.78
0.9
87.1
23.9
Minor 5ss
41.8
-0.9
3.6
61.5
45.3
Minor BPS
70.8
0.51
1.4
75.57
36.2

Associated Gene:

Gene:
CRLF3
Ensembl Gene ID:
ENSAPLG00000006471
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006713
6465662 - 6477718
12057