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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6473612_6477045_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6473612 - 6477045
Intron Length:
3434

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TTGACCTGACTT
Flanking Amino Acid:
TYFCGQTLTFRIETVGQPDR
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96
12.5
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
75.9
0.58
1
73.7
36.9
Minor 5ss
28
-2.5
3.7
43.2
43.8
Minor BPS
53.9
0.2
1.8
73.5
43.5

Associated Gene:

Gene:
CRLF3
Ensembl Gene ID:
ENSAPLG00000006471
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006713
6465662 - 6477718
12057