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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6477159_6477464_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6477159 - 6477464
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTGACTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GATACCTTGACT
Flanking Amino Acid:
RDKAVCISTNGAVFVNGKEM
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
72
34.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
76.4
0.6
1
73.2
41.9
Minor 5ss
28.2
-2.5
2.7
28.9
37.2
Minor BPS
74.2
0.84
1.3
82.3
38.4

Associated Gene:

Gene:
CRLF3
Ensembl Gene ID:
ENSAPLG00000006471
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006713
6465662 - 6477718
12057