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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6496561_6499041_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6496561 - 6499041
Intron Length:
2481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTTC
5'SS Class:
major
3'SS Sequence:
TTTTTCTGTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTGTTCTAACA
Flanking Amino Acid:
EKMKGEQESHSLSAHLQLTF
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
66.9
39.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
84.9
0.78
0.8
85.4
29.4
Minor 5ss
40.3
-1.1
3.5
59
45.8
Minor BPS
60.1
0.31
1.7
75.11
36.7

Associated Gene:

Gene:
SUZ12
Ensembl Gene ID:
ENSAPLG00000006190
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006441
6484513 - 6499088
14576