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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6518461_6518537_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6518461 - 6518537
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCG
5'SS Class:
major
3'SS Sequence:
CTCCTTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GGGTGCTGATCG
Flanking Amino Acid:
RVGLFTPKEIRAVLKKASAL
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54
44.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
77.5
0.62
0.7
72.5
25.7
Minor 5ss
24.2
-3
3.2
29.7
43.3
Minor BPS
42.8
-0.6
2.1
45.83
46.1

Associated Gene:

Gene:
UTP6
Ensembl Gene ID:
ENSAPLG00000005821
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006098
6518369 - 6530072
11704