About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6518623_6519508_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6518623 - 6519508
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTCT
5'SS Class:
major
3'SS Sequence:
CTCTCCACTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTCTCCACT
Flanking Amino Acid:
RKEDFVNYIQYEINLLELIK
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
68.4
39.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
71.6
0.49
0.8
63
33
Minor 5ss
39.6
-1.2
3.3
56.2
48.2
Minor BPS
56.3
0.28
2
81.4
40.1

Associated Gene:

Gene:
UTP6
Ensembl Gene ID:
ENSAPLG00000005821
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006098
6518369 - 6530072
11704