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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6520396_6521175_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6520396 - 6521175
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TTGTTTTTTACA
Flanking Amino Acid:
LSHVAFCKQWNAKHQLSKVF
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
83.9
30.3
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
91.8
0.94
0.7
87.5
30
Minor 5ss
40.2
-1.1
3
49.9
46.4
Minor BPS
64.3
0.44
1.6
74.12
37.8

Associated Gene:

Gene:
UTP6
Ensembl Gene ID:
ENSAPLG00000005821
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006098
6518369 - 6530072
11704